My main research interests include rule-based modelling, knowledge representation, graph rewriting, graph databases as well as computational biology and modelling of complex systems in general.
R. Harmer R., Le Cornec Y., Légaré S. and Oshurko E. (2019), Bio-curation for cellular signalling: the KAMI project. In IEEE/ACM Transactions on Computational Biology and Bioinformatics.
A. Bonifati, P. Furniss, A. Green, R. Harmer, E. Oshurko, H. Voigt (2019). Schema Validation and Evolution for Graph Databases. In Conceptual Modeling: 38th International Conference, ER 2019 (pp. 448-456). Springer Nature.
Harmer, R., Oshurko, E. (2019). KAMIStudio: An Environment for Biocuration of Cellular Signalling Knowledge. In International Conference on Computational Methods in Systems Biology (pp. 322-328). Springer, Cham.
Harmer, R., Oshurko, E. (2019). Knowledge Representation and Update in Hierarchies of Graphs. In International Conference on Graph Transformation (pp. 141-158). Springer, Cham.
Harmer, R., Le Cornec, Y. S., Légaré, S., Oshurko, I. (2017). Bio-Curation for Cellular Signalling: The KAMI Project. In International Conference on Computational Methods in Systems Biology (pp. 3-19). Springer, Cham.
Bonifati, A., Furniss, P., Green, A., Harmer, R., Oshurko, E., & Voigt, H. (2019). Schema Validation and Evolution for Graph Databases. arXiv preprint arXiv:1902.06427.
Talks & Poster Presentations
Talk Schema Validation and Evolution for Graph Databases, 38th International Conference on Conceptual Modeling (ER 2019), Salvador, Bahia, Brazil, November 2019 [slides].
Talk KAMIStudio: an environment for bio-curation of cellular signalling knowledge, [BC]^2 Workshop 'Annotation and curation of computational models in biology', Basel, September 2019 [slides].
Talk Knowledge representation and update in hierarchies of graphs, ICGT 2019 - 12th International Conference on Graph Transformation, Eindhoven, July 2019 [slides].
Talk Schema Validation and Evolution for Graph Databases, Fifth openCypher Implementers Meeting (oCIM 5), Berlin, March 2019 [slides].
Poster presentation KAMI: a bio-curation tool for cellular signalling, ICSB 2018 - 19th International Conference on Systems Biology, Lyon, November 2018