Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
start [2018/09/06 10:38]
Nicolas Schabanel [My current researches include]
start [2019/05/29 12:47]
Nicolas Schabanel [Past Event]
Line 4: Line 4:
 </​const>​ </​const>​
  
-<columns 100% center 440 left - >+<columns 100% center 440 center ​- >
 {{ :​ma_pomme.png?​440x348 |Ma pomme}}\\ {{ :​ma_pomme.png?​440x348 |Ma pomme}}\\
-{{ :email-cnrs.png?250x70 ​|Courriel}}+{{::email-ens.png?300x88|}}
  
 <​newcolumn>​ <​newcolumn>​
Line 30: Line 30:
  
 ==== Past Event  ==== ==== Past Event  ====
 +  * **[[https://​remila60.sciencesconf.org/​|Conférence en l'​honneur d'​Éric Rémila pour ses 60 ans]]**, ÉNS de Lyon, France, May 28, 2019\\ //​(Co-organizer with Kevin Perrot) Founded by ANR, LIP and Codrin Nichitiu.//  ​
   * **[[%%siteRoot%%/​workshop/​ComputingWithMolecularGeometry/​|Workshop:​ Computing with molecular geometry]]**,​ Villa Finaly, Florence, Italie, Nov. 20-23, 2017\\ //​(Co-organizer with Claire Lesieur and Damien Woods) Founded by [[http://​www.ixxi.fr|IXXI]],​ [[https://​tapdance.inria.fr/​|Tapdance]] and la [[http://​www.cnrs.fr/​mi/​|mission pour l'​interdisciplinarité du CNRS]]//   * **[[%%siteRoot%%/​workshop/​ComputingWithMolecularGeometry/​|Workshop:​ Computing with molecular geometry]]**,​ Villa Finaly, Florence, Italie, Nov. 20-23, 2017\\ //​(Co-organizer with Claire Lesieur and Damien Woods) Founded by [[http://​www.ixxi.fr|IXXI]],​ [[https://​tapdance.inria.fr/​|Tapdance]] and la [[http://​www.cnrs.fr/​mi/​|mission pour l'​interdisciplinarité du CNRS]]//
   * **[[http://​www.irif.univ-paris-diderot.fr/​~nschaban/​GT-COA/​Journees_2017|6èmes journées]] du [[http://​www.irif.univ-paris-diderot.fr/​~nschaban/​GT-COA/​|GT CoA]]** (Complexités et Algorithmes),​ LIP, Lyon, Nov. 27-28, 2017   * **[[http://​www.irif.univ-paris-diderot.fr/​~nschaban/​GT-COA/​Journees_2017|6èmes journées]] du [[http://​www.irif.univ-paris-diderot.fr/​~nschaban/​GT-COA/​|GT CoA]]** (Complexités et Algorithmes),​ LIP, Lyon, Nov. 27-28, 2017
Line 44: Line 45:
     * **Random systems** ​     * **Random systems** ​
  
-My work is currently supported by the LIP Installation BQR (2017-18), MoPrExProgMol (2018) and AMARP (2018-20) CNRS Mission pour l'​interdisplinarité,​ and IXXI CalcASMol(2018-19) grants.+My work is currently supported by the LIP Installation BQR (2017-18), MoPrExProgMol (2018) and AMARP (2018-20) ​by CNRS Mission pour l'​interdisplinarité,​ and IXXI CalcASMol (2018-19) grants.
  
 ==== Students ==== ==== Students ====
-  * Nicolas ​**Blanchard** (M2, 2015; PhD advisor 2016-)+  * Daria **Pchelina** (M1, 2019) 
 +  * Nikola ​**Blanchard** (M2, 2015; PhD advisor 2016-2019)
   * Alberto **Vera Azócar** (U. Chile, several research internships 2013, 2015)   * Alberto **Vera Azócar** (U. Chile, several research internships 2013, 2015)
   * Damien **Regnault** (PhD co-advisor with Éric Thierry, 2005-2008)   * Damien **Regnault** (PhD co-advisor with Éric Thierry, 2005-2008)
Line 55: Line 57:
  
 ==== Publications ==== ==== Publications ====
 +  *  **2019**
 +     * **[[https://​www.mdpi.com/​1422-0067/​20/​9/​2259|Oritatami:​ A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://​www.mdpi.com/​journal/​ijms|IJMS (Int. J. of Molecular Sciences)]],​ Special Issue Nucleic Acid Nanotechnology,​ 2019, 20(9), 2259.\\ [[https://​doi.org/​10.3390/​ijms20092259]] ​
   *  **2018**    *  **2018**
-     * **[[%%publiRoot%%/​2018/​2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://​www.irif.fr/​~nschaban/​oritatami/​|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://​isaac2018.ie.nthu.edu.tw/​|ISAAC 2018]], Jiaoxi, Yilan County, Taiwan, Dec. 2018. +     * **[[%%publiRoot%%/​2018/​2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://​www.irif.fr/​~nschaban/​oritatami/​|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://​isaac2018.ie.nthu.edu.tw/​|ISAAC 2018]], LIPIcs.ISAAC.2018.23:​1-23:​13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://​arxiv.org/​abs/​1508.00510|Arxiv]] ] 
-     * **[[%%publiRoot%%/​2018/​2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://​dna24sdnu.com/​|DNA24]],​ Jinan, China, Oct. 2018.\\ Invited talk at [[https://​ucnc2018.lacl.fr/​self-assembly/​|UCNC2018 Self-assembly,​ geometry and computation workshop]], Fontainebleau,​ June 2018. +     * **[[%%publiRoot%%/​2018/​2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://​dna24sdnu.com/​|DNA24]], LNCS 11145:19-36, Jinan, China, Oct. 2018.\\ Invited talk at [[https://​ucnc2018.lacl.fr/​self-assembly/​|UCNC2018 Self-assembly,​ geometry and computation workshop]], Fontainebleau,​ June 2018. \\ //:!: Download the iOS app [[https://​itunes.apple.com/​us/​app/​id1335581323|Scary Pacman]] implementing our algorithms [ [[https://​hub.darcs.net/​nikaoOoOoO/​OritatamiScaling|source code]] ]//
   *  **2017**    *  **2017**
-     * **[[%%publiRoot%%/​2017/​2017-Oritatami-GearyMeunierSchabanelSeki|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //​Submitted//,​ 65 pages, july 2017. [ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​oritatami/​|Supplementary materials]] ] 
      * **[[%%publiRoot%%/​2017/​2017-Walcom-BlanchardSchabanel.pdf|Dynamic Facility Location: Minimizing the Sum of Radii]]**\\ Nicolas K. Blanchard, Nicolas Schabanel. //​[[http://​walcom2017.nctu.edu.tw/​index.html|WALCOM]]//,​ LNCS 10167:​30-41,​ march 2017.      * **[[%%publiRoot%%/​2017/​2017-Walcom-BlanchardSchabanel.pdf|Dynamic Facility Location: Minimizing the Sum of Radii]]**\\ Nicolas K. Blanchard, Nicolas Schabanel. //​[[http://​walcom2017.nctu.edu.tw/​index.html|WALCOM]]//,​ LNCS 10167:​30-41,​ march 2017.
   * **2016**   * **2016**
     * **[[%%publiRoot%%/​2016/​2016-Automata-Schabanel.pdf|Oritatami systems: a computational model for co-transcriptional folding]]**\\ Nicolas Schabanel. **Invited plenary talk** at //​[[http://​automata2016.ini.uzh.ch/​|Automata]]//,​ Jun. 2016.      * **[[%%publiRoot%%/​2016/​2016-Automata-Schabanel.pdf|Oritatami systems: a computational model for co-transcriptional folding]]**\\ Nicolas Schabanel. **Invited plenary talk** at //​[[http://​automata2016.ini.uzh.ch/​|Automata]]//,​ Jun. 2016. 
     * **[[%%publiRoot%%/​2016/​2016-MFCS-GearyMeunierSchabanelSeki.pdf|Programming biomolecules that fold greedily during transcription]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //​[[http://​mfcs.ki.agh.edu.pl|MFCS]]//,​ LIPIcs 58, 43:1-43:14, Aug. 2016.     * **[[%%publiRoot%%/​2016/​2016-MFCS-GearyMeunierSchabanelSeki.pdf|Programming biomolecules that fold greedily during transcription]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //​[[http://​mfcs.ki.agh.edu.pl|MFCS]]//,​ LIPIcs 58, 43:1-43:14, Aug. 2016.
-    * **[[%%publiRoot%%/2016/2016-HALG-GearyMeunierSchabanelSeki.pdf|Folding Turing is hard but feasible]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki.//​[[http://​highlightsofalgorithms.org/​program/​|HALG]]//,​ Jun. 2016.+    * **[[https://arxiv.org/​abs/​1508.00510|Folding Turing is hard but feasible]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki.//​[[http://​highlightsofalgorithms.org/​program/​|HALG]]//,​ Jun. 2016.
  
   *  **2015**    *  **2015**
Line 160: Line 163:
   * **MPRI 2.11.1 [[https://​wikimpri.dptinfo.ens-cachan.fr/​doku.php?​id=cours:​c-2-11-1|Approximation Algorithms & Molecular Algorithms]]**   * **MPRI 2.11.1 [[https://​wikimpri.dptinfo.ens-cachan.fr/​doku.php?​id=cours:​c-2-11-1|Approximation Algorithms & Molecular Algorithms]]**
  
-==== Other ==== 
  
-  *  **Algoseum:​** “Bringing scientific interactive games and exhibitions to science museum” ​