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start [2019/11/01 14:49]
Nicolas Schabanel [Teaching]
start [2020/03/27 12:40] (current)
Nicolas Schabanel [Internship proposal]
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 ==== Internship proposal ==== ==== Internship proposal ====
  
-**2020 M2 Internship proposal: [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​stage/​2020_M2_Internship.pdf|DNA computing: Theory, Models and wet lab experiments]]**+:!: **__2020 M1 Internship proposal:__ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​stage/​2020_M1_internship.pdf|DNA computing: Theory, Models and wet lab experiments]]**
 ==== Students ==== ==== Students ====
 +  * Nicolas **Levy** (M2, 2020)
 +  * Pierre **Marcus** (M2, 2020) 
   * Daria **Pchelina** (M1, 2019) [ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​publications/​2019/​2019-M1-report-Pchelina.pdf|Report]] ]   * Daria **Pchelina** (M1, 2019) [ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​publications/​2019/​2019-M1-report-Pchelina.pdf|Report]] ]
   * Nikola **Blanchard** (M2, 2015; PhD advisor 2016-2019)   * Nikola **Blanchard** (M2, 2015; PhD advisor 2016-2019)
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   * :!: **__2020 M2 Internship proposal:__ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​stage/​2020_M2_Internship.pdf|DNA computing: Theory, Models and wet lab experiments]]**   * :!: **__2020 M2 Internship proposal:__ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​stage/​2020_M2_Internship.pdf|DNA computing: Theory, Models and wet lab experiments]]**
 ==== Publications ==== ==== Publications ====
 +  *  **2020**
 +     * **[[%%publiRoot%%/​2020/​2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://​hal.archives-ouvertes.fr/​hal-02410874/​document|Full version]] ] \\  Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, and Yuki Ubukata. In //​[[http://​latin2020.ime.usp.br/​|LATIN]]//,​ Sao Paulo, 2020. [[https://​hal.archives-ouvertes.fr/​hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://​apps.apple.com/​us/​app/​caos-simulator/​id1488203962|CAOS simulator]] implementing our simulation [ [[https://​hub.darcs.net/​nikaoOoOoO/​CAOSSimulator|source code]] ]//
   *  **2019**    *  **2019**
      * **[[https://​www.mdpi.com/​1422-0067/​20/​9/​2259|Oritatami:​ A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://​www.mdpi.com/​journal/​ijms|IJMS (Int. J. of Molecular Sciences)]],​ Special Issue Nucleic Acid Nanotechnology,​ 2019, 20(9), 2259.\\ [[https://​doi.org/​10.3390/​ijms20092259]] ​      * **[[https://​www.mdpi.com/​1422-0067/​20/​9/​2259|Oritatami:​ A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://​www.mdpi.com/​journal/​ijms|IJMS (Int. J. of Molecular Sciences)]],​ Special Issue Nucleic Acid Nanotechnology,​ 2019, 20(9), 2259.\\ [[https://​doi.org/​10.3390/​ijms20092259]] ​
   *  **2018**    *  **2018**
-     * **[[%%publiRoot%%/​2018/​2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://​www.irif.fr/​~nschaban/​oritatami/​|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://​isaac2018.ie.nthu.edu.tw/​|ISAAC 2018]], LIPIcs.ISAAC.2018.23:​1-23:​13,​ Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://​arxiv.org/​abs/​1508.00510|Arxiv]] ]+     * **[[%%publiRoot%%/​2018/​2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** ​{{anchor:​oritatamituring2018:​}} ​[ [[http://​www.irif.fr/​~nschaban/​oritatami/​|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://​isaac2018.ie.nthu.edu.tw/​|ISAAC 2018]], LIPIcs.ISAAC.2018.23:​1-23:​13,​ Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://​arxiv.org/​abs/​1508.00510|Arxiv]] ]
      * **[[%%publiRoot%%/​2018/​2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://​dna24sdnu.com/​|DNA24]],​ LNCS 11145:​19-36,​ Jinan, China, Oct. 2018.\\ Invited talk at [[https://​ucnc2018.lacl.fr/​self-assembly/​|UCNC2018 Self-assembly,​ geometry and computation workshop]], Fontainebleau,​ June 2018. \\ //:!: Download the iOS app [[https://​itunes.apple.com/​us/​app/​id1335581323|Scary Pacman]] implementing our algorithms [ [[https://​hub.darcs.net/​nikaoOoOoO/​OritatamiScaling|source code]] ]//      * **[[%%publiRoot%%/​2018/​2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://​dna24sdnu.com/​|DNA24]],​ LNCS 11145:​19-36,​ Jinan, China, Oct. 2018.\\ Invited talk at [[https://​ucnc2018.lacl.fr/​self-assembly/​|UCNC2018 Self-assembly,​ geometry and computation workshop]], Fontainebleau,​ June 2018. \\ //:!: Download the iOS app [[https://​itunes.apple.com/​us/​app/​id1335581323|Scary Pacman]] implementing our algorithms [ [[https://​hub.darcs.net/​nikaoOoOoO/​OritatamiScaling|source code]] ]//
   *  **2017**    *  **2017**
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   *  **2015**    *  **2015**
-    * **[[%%publiRoot%%/​2015/​2015-DNA21-GearyMeunierSchabanelSeki.pdf|Efficient universal computation by molecular co-transcriptional folding (Short announcement)]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //​[[http://​dna21.wyss.harvard.edu/​|DNA21]]//,​ 1 page, 2015.  ​(Full version ​in submission, see above) +    * **[[%%publiRoot%%/​2015/​2015-DNA21-GearyMeunierSchabanelSeki.pdf|Efficient universal computation by molecular co-transcriptional folding (Short announcement)]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //​[[http://​dna21.wyss.harvard.edu/​|DNA21]]//,​ 1 page, 2015.  ​[[#​oritatamituring2018|Full version ​published at ISAAC 2018]] ​
   *  **2014**   *  **2014**
     * **[[%%publiRoot%%/​2014/​2014-ICALP-EisenstatMathieuSchabanel.pdf|Facility Location in Evolving Metrics]]**\\ with David Eisenstat and Claire Mathieu. //ICALP,// pages 459-470, 2014.     * **[[%%publiRoot%%/​2014/​2014-ICALP-EisenstatMathieuSchabanel.pdf|Facility Location in Evolving Metrics]]**\\ with David Eisenstat and Claire Mathieu. //ICALP,// pages 459-470, 2014.