Usefull links

Some of these links are in french: [fr].

Linux and CLI environment

• SuperBasics Tutorial about Basics of Command Line Interface (University of London, UK)

• The Art of Command Line (also in [fr])

• UNIX Tutorial for Beginners (University of Surrey, UK)

• Introduction to UNIX (Imperial College, London)

• The Unix Shell (Software Carpentry)

• Guru99’s Linux Tutorials for Beginners

• XKCD #936

• Usability of Passwords

Bash and shell environment

• http://abs.traduc.org/ [fr]

• https://www.shellcheck.net/ <- use this :!:

• https://drawings.jvns.ca/bashtips/ <- It says use shellcheck !!

• https://explainshell.com/

• http://www.davidpashley.com/articles/writing-robust-shell-scripts/ (robust scripts)

• http://www.commentcamarche.net/faq/5444-bash-les-parametres [fr]

• http://wiki.bash-hackers.org/commands/classictest

• http://coagul.org/drupal/publication/programmation-en-shell-bash-sous-linux [fr]

• http://synapse.wordpress.com/2005/12/28/a-dip-in-the-cup-of-bash-scripting/

• http://splike.com/wiki/Bash_Scripting_FAQ

• http://www.linuxjournal.com/content/bash-preserving-whitespace-using-set-and-eval

• http://linux.101hacks.com/unix/od-command-examples/ (od)

• http://hacktux.com/bash/script/efficient (builtin)

• http://mywiki.wooledge.org/ArithmeticExpression

• http://redsymbol.net/articles/unofficial-bash-strict-mode/

• https://sipb.mit.edu/doc/safe-shell/

• http://www.dwheeler.com/essays/fixing-unix-linux-filenames.html

• http://mywiki.wooledge.org/BashPitfalls

• https://blog.seboss666.info/2020/04/programmation-defensive-en-bash/

HPC and Research Computing

• Introduction to High-Performance Computing (online course)

• HPC novice (online course)

• Investigating a Job Failure

Other HPC Centers

Our sources of inspiration for this documentation:

• https://portal.tacc.utexas.edu/user-guides/maverick2

• https://www.sherlock.stanford.edu/docs/

• https://www.tchpc.tcd.ie/node/854

• https://help.rc.ufl.edu/doc/UFRC_Help_and_Documentation

• https://hpc.gsi.de/virgo/index.html

• https://researchcomputing.princeton.edu/

• https://hpc-uit.readthedocs.io/en/latest/index.html

• https://support.ceci-hpc.be/doc/index.html

• https://hpc.nih.gov/docs/job_dependencies.html

• https://mesocentre.univ-amu.fr/slurm/ [fr]

HPC related papers

• https://www.admin-magazine.com/HPC/Articles/ :

  • https://www.admin-magazine.com/HPC/Articles/Processor-and-Memory-Affinity-Tools

  • https://www.admin-magazine.com/HPC/Articles/Processor-Affinity-for-OpenMP-and-MPI

  • https://www.admin-magazine.com/HPC/Articles/Mounting-Compressed-Archives-as-a-User

• https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009207