Usefull links — PSMN Documentation documentation
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Table of Contents

  • Quickstart
  • Connection
  • Environment & tools
  • Filesystem overview
  • Clusters usage
  • Tutorials

Annexes

  • Installed softwares
  • Available Modules
  • Glossary
  • Usefull links
    • Linux and CLI environment
    • Bash and shell environment
    • HPC and Research Computing
    • Other HPC Centers
    • HPC related papers
  • Drafts
PSMN Documentation
  • Usefull links
  • View page source

Usefull links

Some of these links are in french: [fr].

Linux and CLI environment

  • SuperBasics Tutorial about Basics of Command Line Interface (University of London, UK)

  • The Art of Command Line (also in [fr])

  • UNIX Tutorial for Beginners (University of Surrey, UK)

  • Introduction to UNIX (Imperial College, London)

  • The Unix Shell (Software Carpentry)

  • Guru99’s Linux Tutorials for Beginners

  • XKCD #936

  • Usability of Passwords

Bash and shell environment

  • http://abs.traduc.org/ [fr]

  • https://www.shellcheck.net/ <- use this :!:

  • https://drawings.jvns.ca/bashtips/ <- It says use shellcheck !!

  • https://explainshell.com/

  • http://www.davidpashley.com/articles/writing-robust-shell-scripts/ (robust scripts)

  • http://www.commentcamarche.net/faq/5444-bash-les-parametres [fr]

  • http://wiki.bash-hackers.org/commands/classictest

  • http://coagul.org/drupal/publication/programmation-en-shell-bash-sous-linux [fr]

  • http://synapse.wordpress.com/2005/12/28/a-dip-in-the-cup-of-bash-scripting/

  • http://splike.com/wiki/Bash_Scripting_FAQ

  • http://www.linuxjournal.com/content/bash-preserving-whitespace-using-set-and-eval

  • http://linux.101hacks.com/unix/od-command-examples/ (od)

  • http://hacktux.com/bash/script/efficient (builtin)

  • http://mywiki.wooledge.org/ArithmeticExpression

  • http://redsymbol.net/articles/unofficial-bash-strict-mode/

  • https://sipb.mit.edu/doc/safe-shell/

  • http://www.dwheeler.com/essays/fixing-unix-linux-filenames.html

  • http://mywiki.wooledge.org/BashPitfalls

  • https://blog.seboss666.info/2020/04/programmation-defensive-en-bash/

HPC and Research Computing

  • Introduction to High-Performance Computing (online course)

  • HPC novice (online course)

  • Investigating a Job Failure

Other HPC Centers

Our sources of inspiration for this documentation:

  • https://portal.tacc.utexas.edu/user-guides/maverick2

  • https://www.sherlock.stanford.edu/docs/

  • https://www.tchpc.tcd.ie/node/854

  • https://help.rc.ufl.edu/doc/UFRC_Help_and_Documentation

  • https://hpc.gsi.de/virgo/index.html

  • https://researchcomputing.princeton.edu/

  • https://hpc-uit.readthedocs.io/en/latest/index.html

  • https://support.ceci-hpc.be/doc/index.html

  • https://hpc.nih.gov/docs/job_dependencies.html

  • https://mesocentre.univ-amu.fr/slurm/ [fr]

HPC related papers

  • https://www.admin-magazine.com/HPC/Articles/ :
    • https://www.admin-magazine.com/HPC/Articles/Processor-and-Memory-Affinity-Tools

    • https://www.admin-magazine.com/HPC/Articles/Processor-Affinity-for-OpenMP-and-MPI

    • https://www.admin-magazine.com/HPC/Articles/Mounting-Compressed-Archives-as-a-User

  • https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009207

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