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start [2018/09/21 15:02] Nicolas Schabanel [Publications] |
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==== Students ==== | ==== Students ==== | ||
- | * Nicolas **Blanchard** (M2, 2015; PhD advisor 2016-) | + | * Daria **Pchelina** (M1, 2019) |
+ | * Nikola **Blanchard** (M2, 2015; PhD advisor 2016-2019) | ||
* Alberto **Vera Azócar** (U. Chile, several research internships 2013, 2015) | * Alberto **Vera Azócar** (U. Chile, several research internships 2013, 2015) | ||
* Damien **Regnault** (PhD co-advisor with Éric Thierry, 2005-2008) | * Damien **Regnault** (PhD co-advisor with Éric Thierry, 2005-2008) | ||
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==== Publications ==== | ==== Publications ==== | ||
+ | * **2019** | ||
+ | * **[[https://www.mdpi.com/1422-0067/20/9/2259|Oritatami: A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://www.mdpi.com/journal/ijms|IJMS (Int. J. of Molecular Sciences)]], Special Issue Nucleic Acid Nanotechnology, 2019, 20(9), 2259.\\ [[https://doi.org/10.3390/ijms20092259]] | ||
* **2018** | * **2018** | ||
- | * **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], Jiaoxi, Yilan County, Taiwan, Dec. 2018. | + | * **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], LIPIcs.ISAAC.2018.23:1-23:13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://arxiv.org/abs/1508.00510|Arxiv]] ] |
- | * **[[%%publiRoot%%/2018/2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://dna24sdnu.com/|DNA24]], Jinan, China, Oct. 2018.\\ Invited talk at [[https://ucnc2018.lacl.fr/self-assembly/|UCNC2018 Self-assembly, geometry and computation workshop]], Fontainebleau, June 2018. \\ //:!: Download the iOS app [[https://itunes.apple.com/us/app/id1335581323|Scary Pacman]] implementing our algorithms [ [[https://hub.darcs.net/nikaoOoOoO/OritatamiScaling|source code]] ]// | + | * **[[%%publiRoot%%/2018/2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://dna24sdnu.com/|DNA24]], LNCS 11145:19-36, Jinan, China, Oct. 2018.\\ Invited talk at [[https://ucnc2018.lacl.fr/self-assembly/|UCNC2018 Self-assembly, geometry and computation workshop]], Fontainebleau, June 2018. \\ //:!: Download the iOS app [[https://itunes.apple.com/us/app/id1335581323|Scary Pacman]] implementing our algorithms [ [[https://hub.darcs.net/nikaoOoOoO/OritatamiScaling|source code]] ]// |
* **2017** | * **2017** | ||
* **[[%%publiRoot%%/2017/2017-Walcom-BlanchardSchabanel.pdf|Dynamic Facility Location: Minimizing the Sum of Radii]]**\\ Nicolas K. Blanchard, Nicolas Schabanel. //[[http://walcom2017.nctu.edu.tw/index.html|WALCOM]]//, LNCS 10167:30-41, march 2017. | * **[[%%publiRoot%%/2017/2017-Walcom-BlanchardSchabanel.pdf|Dynamic Facility Location: Minimizing the Sum of Radii]]**\\ Nicolas K. Blanchard, Nicolas Schabanel. //[[http://walcom2017.nctu.edu.tw/index.html|WALCOM]]//, LNCS 10167:30-41, march 2017. | ||
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* **[[%%publiRoot%%/2016/2016-Automata-Schabanel.pdf|Oritatami systems: a computational model for co-transcriptional folding]]**\\ Nicolas Schabanel. **Invited plenary talk** at //[[http://automata2016.ini.uzh.ch/|Automata]]//, Jun. 2016. | * **[[%%publiRoot%%/2016/2016-Automata-Schabanel.pdf|Oritatami systems: a computational model for co-transcriptional folding]]**\\ Nicolas Schabanel. **Invited plenary talk** at //[[http://automata2016.ini.uzh.ch/|Automata]]//, Jun. 2016. | ||
* **[[%%publiRoot%%/2016/2016-MFCS-GearyMeunierSchabanelSeki.pdf|Programming biomolecules that fold greedily during transcription]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //[[http://mfcs.ki.agh.edu.pl|MFCS]]//, LIPIcs 58, 43:1-43:14, Aug. 2016. | * **[[%%publiRoot%%/2016/2016-MFCS-GearyMeunierSchabanelSeki.pdf|Programming biomolecules that fold greedily during transcription]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //[[http://mfcs.ki.agh.edu.pl|MFCS]]//, LIPIcs 58, 43:1-43:14, Aug. 2016. | ||
- | * **[[%%publiRoot%%/2016/2016-HALG-GearyMeunierSchabanelSeki.pdf|Folding Turing is hard but feasible]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki.//[[http://highlightsofalgorithms.org/program/|HALG]]//, Jun. 2016. | + | * **[[https://arxiv.org/abs/1508.00510|Folding Turing is hard but feasible]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki.//[[http://highlightsofalgorithms.org/program/|HALG]]//, Jun. 2016. |
* **2015** | * **2015** |