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start [2019/05/15 13:04] Nicolas Schabanel [Students] |
start [2019/10/21 09:55] Nicolas Schabanel [Teaching] |
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69364 Lyon Cedex 07\\ | 69364 Lyon Cedex 07\\ | ||
France\\ | France\\ | ||
- | Office: **332** //(Site Monnod - Main building - 3rd floor - South)//\\ | + | Office: **322** //(Site Monnod - Main building - 3rd floor - South)//\\ |
Phone: +33 4 72 72 80 00 / +33 4 26 23 39 67 / +33 4 72 72 87 42 | Phone: +33 4 72 72 80 00 / +33 4 26 23 39 67 / +33 4 72 72 87 42 | ||
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==== Past Event ==== | ==== Past Event ==== | ||
+ | * **[[https://remila60.sciencesconf.org/|Conférence en l'honneur d'Éric Rémila pour ses 60 ans]]**, ÉNS de Lyon, France, May 28, 2019\\ //(Co-organizer with Kevin Perrot) Founded by ANR, LIP and Codrin Nichitiu.// | ||
* **[[%%siteRoot%%/workshop/ComputingWithMolecularGeometry/|Workshop: Computing with molecular geometry]]**, Villa Finaly, Florence, Italie, Nov. 20-23, 2017\\ //(Co-organizer with Claire Lesieur and Damien Woods) Founded by [[http://www.ixxi.fr|IXXI]], [[https://tapdance.inria.fr/|Tapdance]] and la [[http://www.cnrs.fr/mi/|mission pour l'interdisciplinarité du CNRS]]// | * **[[%%siteRoot%%/workshop/ComputingWithMolecularGeometry/|Workshop: Computing with molecular geometry]]**, Villa Finaly, Florence, Italie, Nov. 20-23, 2017\\ //(Co-organizer with Claire Lesieur and Damien Woods) Founded by [[http://www.ixxi.fr|IXXI]], [[https://tapdance.inria.fr/|Tapdance]] and la [[http://www.cnrs.fr/mi/|mission pour l'interdisciplinarité du CNRS]]// | ||
* **[[http://www.irif.univ-paris-diderot.fr/~nschaban/GT-COA/Journees_2017|6èmes journées]] du [[http://www.irif.univ-paris-diderot.fr/~nschaban/GT-COA/|GT CoA]]** (Complexités et Algorithmes), LIP, Lyon, Nov. 27-28, 2017 | * **[[http://www.irif.univ-paris-diderot.fr/~nschaban/GT-COA/Journees_2017|6èmes journées]] du [[http://www.irif.univ-paris-diderot.fr/~nschaban/GT-COA/|GT CoA]]** (Complexités et Algorithmes), LIP, Lyon, Nov. 27-28, 2017 | ||
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==== Students ==== | ==== Students ==== | ||
- | * Daria **Pchelina** (M1, 2019) | + | * Daria **Pchelina** (M1, 2019) [ [[http://perso.ens-lyon.fr/nicolas.schabanel/publications/2019/2019-M1-report-Pchelina.pdf|Report]] ] |
* Nikola **Blanchard** (M2, 2015; PhD advisor 2016-2019) | * Nikola **Blanchard** (M2, 2015; PhD advisor 2016-2019) | ||
* Alberto **Vera Azócar** (U. Chile, several research internships 2013, 2015) | * Alberto **Vera Azócar** (U. Chile, several research internships 2013, 2015) | ||
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* Emmanuelle **Lebhar** (PhD co-advisor with Michel Morvan, 2003-2005) | * Emmanuelle **Lebhar** (PhD co-advisor with Michel Morvan, 2003-2005) | ||
* Sandeep **Dey** (Master thesis advisor, 2005) | * Sandeep **Dey** (Master thesis advisor, 2005) | ||
+ | |||
+ | ==== Teaching ==== | ||
+ | * **M2IF SCR1 [[lecturemolecularprogramming|Molecular programming: Theory & wet-lab experiments]]** [ [[lecturemolecularprogramming#past_lectures_summary|past lectures]] ] | ||
+ | * **MPRI 2.11.1 [[https://wikimpri.dptinfo.ens-cachan.fr/doku.php?id=cours:c-2-11-1|Approximation Algorithms & Molecular Algorithms]]** [ [[https://wikimpri.dptinfo.ens-cachan.fr/doku.php?id=cours:c-2-11-1#course_summary_2019-20molecular_programming_lectures_5-8|past lectures]] ] | ||
==== Publications ==== | ==== Publications ==== | ||
+ | * **2019** | ||
+ | * **[[https://www.mdpi.com/1422-0067/20/9/2259|Oritatami: A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://www.mdpi.com/journal/ijms|IJMS (Int. J. of Molecular Sciences)]], Special Issue Nucleic Acid Nanotechnology, 2019, 20(9), 2259.\\ [[https://doi.org/10.3390/ijms20092259]] | ||
* **2018** | * **2018** | ||
* **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], LIPIcs.ISAAC.2018.23:1-23:13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://arxiv.org/abs/1508.00510|Arxiv]] ] | * **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], LIPIcs.ISAAC.2018.23:1-23:13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://arxiv.org/abs/1508.00510|Arxiv]] ] | ||
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* 2003 | * 2003 | ||
* **[[%%publiRoot%%/2003/2003.04-Minotaure-Schabanel.pdf|Thèse idiote: le hasard fabrique des certitudes]]** (in French)\\ //Le minotaure// (trimenstrial journal, 20 000ex), 1:66-69, april-june 2003. | * **[[%%publiRoot%%/2003/2003.04-Minotaure-Schabanel.pdf|Thèse idiote: le hasard fabrique des certitudes]]** (in French)\\ //Le minotaure// (trimenstrial journal, 20 000ex), 1:66-69, april-june 2003. | ||
- | |||
- | ==== Teaching ==== | ||
- | |||
- | * **MPRI 2.11.1 [[https://wikimpri.dptinfo.ens-cachan.fr/doku.php?id=cours:c-2-11-1|Approximation Algorithms & Molecular Algorithms]]** | ||