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--- start [2019/10/21 09:40]
Nicolas Schabanel [Teaching]
+++ start [2020/06/24 15:27]
Nicolas Schabanel [Directeur de recherches CNRS]
@@ Line 17: / Line 17: @@
 France\\
 Office: **322** //(Site Monnod - Main building - 3rd floor - South)//\\
-Phone: +33 4 72 72 80 00 / +33 4 26 23 39 67 / +33 4 72 72 87 42
+Phone: +33 4 72 72 80 00 / +33 4 26 73 14 55
 Resident member of the\\
@@ Line 47: / Line 47: @@
 My work is currently supported by the LIP Installation BQR (2017-18), MoPrExProgMol (2018) and AMARP (2018-20) by CNRS Mission pour l'interdisplinarité, and IXXI CalcASMol (2018-19) grants.
+==== Internship proposal ====
+:!: **__2020 M1 Internship proposal:__ [[http://perso.ens-lyon.fr/nicolas.schabanel/stage/2020_M1_internship.pdf|DNA computing: Theory, Models and wet lab experiments]]**
 ==== Students ====
+  * Nicolas **Levy** (M2, 2020)
+  * Pierre **Marcus** (M2, 2020)
   * Daria **Pchelina** (M1, 2019) [ [[http://perso.ens-lyon.fr/nicolas.schabanel/publications/2019/2019-M1-report-Pchelina.pdf|Report]] ]
   * Nikola **Blanchard** (M2, 2015; PhD advisor 2016-2019)
@@ Line 57: / Line 62: @@
 ==== Teaching ====
-  * **M2IF SCR1 [[lecturemolecularprogramming|Molecular programming: Theory & wet-lab experiments]]**
+  * **[[http://www.ens-lyon.fr/DI/en/informations-m2-2019-2020/|M2IF]] SCR1 [[lecturemolecularprogramming|Molecular programming: Theory & wet-lab experiments]]** [ [[lecturemolecularprogramming#past_lectures_summary|past lectures]] ]
-  * **MPRI 2.11.1 [[https://wikimpri.dptinfo.ens-cachan.fr/doku.php?id=cours:c-2-11-1|Approximation Algorithms & Molecular Algorithms]]**
+  * **[[https://wikimpri.dptinfo.ens-cachan.fr/doku.php?id=start|MPRI]] 2.11.1 [[https://wikimpri.dptinfo.ens-cachan.fr/doku.php?id=cours:c-2-11-1|Approximation Algorithms & Molecular Algorithms]]** [ [[https://wikimpri.dptinfo.ens-cachan.fr/doku.php?id=cours:c-2-11-1#course_summary_2019-20molecular_programming_lectures_5-8|past lectures]] ]
+  * :!: **__2020 M2 Internship proposal:__ [[http://perso.ens-lyon.fr/nicolas.schabanel/stage/2020_M2_Internship.pdf|DNA computing: Theory, Models and wet lab experiments]]**
 ==== Publications ====
+  *  **2020**
+     * **[[%%publiRoot%%/2020/2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://hal.archives-ouvertes.fr/hal-02410874/document|Full version]] ] \\  Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, and Yuki Ubukata. In //[[http://latin2020.ime.usp.br/|LATIN]]//, Sao Paulo, 2020. [[https://hal.archives-ouvertes.fr/hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://apps.apple.com/us/app/caos-simulator/id1488203962|CAOS simulator]] implementing our simulation [ [[https://hub.darcs.net/nikaoOoOoO/CAOSSimulator|source code]] ]//
   *  **2019**
      * **[[https://www.mdpi.com/1422-0067/20/9/2259|Oritatami: A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://www.mdpi.com/journal/ijms|IJMS (Int. J. of Molecular Sciences)]], Special Issue Nucleic Acid Nanotechnology, 2019, 20(9), 2259.\\ [[https://doi.org/10.3390/ijms20092259]]
   *  **2018**
-     * **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], LIPIcs.ISAAC.2018.23:1-23:13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://arxiv.org/abs/1508.00510|Arxiv]] ]
+     * **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** {{anchor:oritatamituring2018:}} [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], LIPIcs.ISAAC.2018.23:1-23:13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://arxiv.org/abs/1508.00510|Arxiv]] ]
      * **[[%%publiRoot%%/2018/2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://dna24sdnu.com/|DNA24]], LNCS 11145:19-36, Jinan, China, Oct. 2018.\\ Invited talk at [[https://ucnc2018.lacl.fr/self-assembly/|UCNC2018 Self-assembly, geometry and computation workshop]], Fontainebleau, June 2018. \\ //:!: Download the iOS app [[https://itunes.apple.com/us/app/id1335581323|Scary Pacman]] implementing our algorithms [ [[https://hub.darcs.net/nikaoOoOoO/OritatamiScaling|source code]] ]//
   *  **2017**
@@ Line 74: / Line 81: @@
   *  **2015**
-    * **[[%%publiRoot%%/2015/2015-DNA21-GearyMeunierSchabanelSeki.pdf|Efficient universal computation by molecular co-transcriptional folding (Short announcement)]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //[[http://dna21.wyss.harvard.edu/|DNA21]]//, 1 page, 2015.  (Full version in submission, see above)
+    * **[[%%publiRoot%%/2015/2015-DNA21-GearyMeunierSchabanelSeki.pdf|Efficient universal computation by molecular co-transcriptional folding (Short announcement)]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //[[http://dna21.wyss.harvard.edu/|DNA21]]//, 1 page, 2015.  [[#oritatamituring2018|Full version published at ISAAC 2018]]
   *  **2014**
     * **[[%%publiRoot%%/2014/2014-ICALP-EisenstatMathieuSchabanel.pdf|Facility Location in Evolving Metrics]]**\\ with David Eisenstat and Claire Mathieu. //ICALP,// pages 459-470, 2014.