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start [2021/02/13 12:52]
Nicolas Schabanel [Publications]
start [2021/03/05 15:29]
127.0.0.1 external edit
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 ==== Students ==== ==== Students ====
   * Nicolas **Levy** (M2, 2020; PhD advisor 2020-)   * Nicolas **Levy** (M2, 2020; PhD advisor 2020-)
-  * Pierre **Marcus** (M2, 2020) +  * Pierre **Marcus** (M2, 2020; 4A, 2021
   * Daria **Pchelina** (M1, 2019) [ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​publications/​2019/​2019-M1-report-Pchelina.pdf|Report]] ]   * Daria **Pchelina** (M1, 2019) [ [[http://​perso.ens-lyon.fr/​nicolas.schabanel/​publications/​2019/​2019-M1-report-Pchelina.pdf|Report]] ]
   * Enka (Nikola) **Blanchard** (M2, 2015; PhD co-advisor with Ted Selker 2016-2019) **:!: Prix de thèse PSL SHS //"​Interface Sciences/​Humanités"//​** [ [[http://​www.ens-lyon.fr/​actualite/​recherche/​enka-blanchard-laureate-du-prix-de-these-psl-shs?​ctx=contexte|web]] ​ | [[https://​www.youtube.com/​watch?​v=Rlps2gkKb-A&​feature=youtu.be|Remise du prix]] ]   * Enka (Nikola) **Blanchard** (M2, 2015; PhD co-advisor with Ted Selker 2016-2019) **:!: Prix de thèse PSL SHS //"​Interface Sciences/​Humanités"//​** [ [[http://​www.ens-lyon.fr/​actualite/​recherche/​enka-blanchard-laureate-du-prix-de-these-psl-shs?​ctx=contexte|web]] ​ | [[https://​www.youtube.com/​watch?​v=Rlps2gkKb-A&​feature=youtu.be|Remise du prix]] ]
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 ==== Publications ==== ==== Publications ====
   *  **2021**   *  **2021**
-     * **[[%%publiRoot%%/​2021/​2021-PchelinaSchabanelSekiTheyssier.pdf|Oritatami simulates self-avoiding 2D Turing machines]]** \\  Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, and Guillaume ​Theuyssier. Submitted, 2021. [[%%publiRoot%%/​2021/​oritatami-turedo-rule.pdf|Supplementary material]] +     * **[[%%publiRoot%%/​2021/​2021-PchelinaSchabanelSekiTheyssier.pdf|Oritatami simulates self-avoiding 2D Turing machines]]** \\  Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Guillaume ​Theyssier. Submitted, 2021. [[%%publiRoot%%/​2021/​oritatami-turedo-rule.pdf|Supplementary material]]
- +
   *  **2020**    *  **2020**
-     * **[[%%publiRoot%%/​2020/​2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://​hal.archives-ouvertes.fr/​hal-02410874/​document|Full version]] ] \\  Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, and Yuki Ubukata. In //​[[http://​latin2020.ime.usp.br/​|LATIN]]//,​ Sao Paulo, 2020. [[https://​hal.archives-ouvertes.fr/​hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://​apps.apple.com/​us/​app/​caos-simulator/​id1488203962|CAOS simulator]] implementing our simulation [ [[https://​hub.darcs.net/​nikaoOoOoO/​CAOSSimulator|source code]] ]//+     * **[[%%publiRoot%%/​2020/​2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://​hal.archives-ouvertes.fr/​hal-02410874/​document|Full version]] ] \\  Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Yuki Ubukata. In //​[[http://​latin2020.ime.usp.br/​|LATIN]]//,​ Sao Paulo, 2020. [[https://​hal.archives-ouvertes.fr/​hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://​apps.apple.com/​us/​app/​caos-simulator/​id1488203962|CAOS simulator]] implementing our simulation [ [[https://​hub.darcs.net/​nikaoOoOoO/​CAOSSimulator|source code]] ]//
   *  **2019**    *  **2019**
      * **[[https://​www.mdpi.com/​1422-0067/​20/​9/​2259|Oritatami:​ A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://​www.mdpi.com/​journal/​ijms|IJMS (Int. J. of Molecular Sciences)]],​ Special Issue Nucleic Acid Nanotechnology,​ 2019, 20(9), 2259.\\ [[https://​doi.org/​10.3390/​ijms20092259]] ​      * **[[https://​www.mdpi.com/​1422-0067/​20/​9/​2259|Oritatami:​ A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/​2019/​2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://​www.mdpi.com/​journal/​ijms|IJMS (Int. J. of Molecular Sciences)]],​ Special Issue Nucleic Acid Nanotechnology,​ 2019, 20(9), 2259.\\ [[https://​doi.org/​10.3390/​ijms20092259]] ​