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start [2021/05/14 18:41] Nicolas Schabanel [Softwares] |
start [2021/11/17 14:19] Nicolas Schabanel [Publications] |
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| :!: **__2021 Internship proposal:__ [[http://perso.ens-lyon.fr/nicolas.schabanel/stage/2021_internship.pdf|DNA computing: Theory, Models and wet lab experiments]]** | :!: **__2021 Internship proposal:__ [[http://perso.ens-lyon.fr/nicolas.schabanel/stage/2021_internship.pdf|DNA computing: Theory, Models and wet lab experiments]]** | ||
| ==== Students ==== | ==== Students ==== | ||
| + | * Amaury **Jacques** (M1, 2021) | ||
| + | * Octave **Hazard** (M2, 2021) | ||
| * Nicolas **Levy** (M2, 2020; PhD advisor 2020-) | * Nicolas **Levy** (M2, 2020; PhD advisor 2020-) | ||
| * Pierre **Marcus** (M2, 2020; 4A, 2021) | * Pierre **Marcus** (M2, 2020; 4A, 2021) | ||
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| ==== Softwares ==== | ==== Softwares ==== | ||
| - | * **[[http://www.ens-lyon.fr/ensnano|ENSnano]]: a 3D DNA nanostructure design software** \\ codeveloped with [[http://perso.ens-lyon.fr/nicolas.levy|Nicolas Levy]] | + | * :!: **[[http://www.ens-lyon.fr/ensnano|ENSnano]]**: a 3D DNA nanostructure design software for Windows, Mac OS and linux\\ codeveloped with [[http://perso.ens-lyon.fr/nicolas.levy|Nicolas Levy]], 2021 [ [[http://www.ens-lyon.fr/ensnano|website]] | [[https://www.youtube.com/channel/UC-5XMNJouMPsB9pW5Q9UVcA|youtube channel]] ] |
| + | * :!: **[[http://perso.ens-lyon.fr/nicolas.schabanel/OSsimulator|OS simulator]]**: a fast and memory-efficient iPad app that simulates arbitrary Oritatami Systems //(works with limitations on Apple silicon M1 too)//, 2021 [ [[http://perso.ens-lyon.fr/nicolas.schabanel/OSsimulator|website]] | [[https://apps.apple.com/us/app/simple-os-simulator/id1530162352|download]] ] | ||
| + | * **[[https://apps.apple.com/us/app/caos-simulator/id1488203962|CAOS simulator]]**: an iOS app implementing our Oritatami cellular automata simulation, 2020 \\ [ [[https://hub.darcs.net/nikaoOoOoO/CAOSSimulator|source code]] ] | ||
| + | * **[[https://itunes.apple.com/us/app/id1335581323|Scary Pacman]]**: an iOS app implementing our Oritatami scaling algorihms, 2018\\ [ [[https://hub.darcs.net/nikaoOoOoO/OritatamiScaling|source code]] ] | ||
| + | * **[[https://apps.apple.com/app/clean-scan/id995830264|Clean scan]]**: an iOS app to take printable pictures of white, green and black board, 2015 | ||
| ==== Publications ==== | ==== Publications ==== | ||
| * **2021** | * **2021** | ||
| - | * **[[%%publiRoot%%/2021/2021-LevySchabanel.pdf|ENSnano: a 3D modeling software for DNA nanostructures]]** \\ Nicolas Levy, Nicolas Schabanel. Submitted, 2021. [ [[https://www.ens-lyon.fr/ensnano|ENSnano website]] ] | + | * **[[%%publiRoot%%/2021/2021-PchelinaSchabanelSekiTheyssier.pdf|Oritatami systems assemble shapes no less |
| - | * **[[%%publiRoot%%/2021/2021-PchelinaSchabanelSekiTheyssier.pdf|Oritatami simulates self-avoiding 2D Turing machines]]** \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Guillaume Theyssier. Submitted, 2021. [[%%publiRoot%%/2021/oritatami-turedo-rule.pdf|Supplementary material]] | + | complex than tile assembly model (aTAM)]]** \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Guillaume Theyssier. Submitted, 2021. \\ Supplementary material: [[https://hub.darcs.net/turedo2oritatami/turedo2oritatami|Turedo2oritatami compiler]] |
| + | * **[[%%publiRoot%%/2021/2021-LevySchabanel.pdf|ENSnano: a 3D modeling software for DNA nanostructures]]** \\ Nicolas Levy, Nicolas Schabanel. //In Proc. of [[http://dna27.iopconfs.org/home|DNA27]]//, LIPIcs, vol. 205, pp.5:1-23, doi:10.4230/LIPIcs.DNA.27.5, 2021. **:!: best student paper & best presentation award.** \\ :!: Download ENSnano at: [ [[https://www.ens-lyon.fr/ensnano|ENSnano website]] ] [ [[https://www.youtube.com/channel/UC-5XMNJouMPsB9pW5Q9UVcA|Youtube channel]] ] | ||
| * **2020** | * **2020** | ||
| * **[[%%publiRoot%%/2020/2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://hal.archives-ouvertes.fr/hal-02410874/document|Full version]] ] \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Yuki Ubukata. In //[[http://latin2020.ime.usp.br/|LATIN]]//, Sao Paulo, 2020. [[https://hal.archives-ouvertes.fr/hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://apps.apple.com/us/app/caos-simulator/id1488203962|CAOS simulator]] implementing our simulation [ [[https://hub.darcs.net/nikaoOoOoO/CAOSSimulator|source code]] ]// | * **[[%%publiRoot%%/2020/2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://hal.archives-ouvertes.fr/hal-02410874/document|Full version]] ] \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Yuki Ubukata. In //[[http://latin2020.ime.usp.br/|LATIN]]//, Sao Paulo, 2020. [[https://hal.archives-ouvertes.fr/hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://apps.apple.com/us/app/caos-simulator/id1488203962|CAOS simulator]] implementing our simulation [ [[https://hub.darcs.net/nikaoOoOoO/CAOSSimulator|source code]] ]// | ||