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start [2021/11/18 11:36] Nicolas Schabanel [Teaching] |
start [2022/01/15 16:17] Nicolas Schabanel [Publications] |
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* **[[https://apps.apple.com/app/clean-scan/id995830264|Clean scan]]**: an iOS app to take printable pictures of white, green and black board, 2015 | * **[[https://apps.apple.com/app/clean-scan/id995830264|Clean scan]]**: an iOS app to take printable pictures of white, green and black board, 2015 | ||
==== Publications ==== | ==== Publications ==== | ||
+ | * **2022** | ||
+ | * **[[%%publiRoot%%/2022/2022-PchelinaSchabanelSekiTheyssier-STACS.pdf|Oritatami systems assemble shapes no less | ||
+ | complex than tile assembly model (aTAM)]]** \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Guillaume Theyssier. //[[https://stacs2022.sciencesconf.org/|STACS]]//, 26:1-23, 2022. \\ Supplementary material: [ [[https://hub.darcs.net/turedo2oritatami/turedo2oritatami/python|Turedo2oritatami compiler]] | [[%%publiRoot%%/2021/2021-PchelinaSchabanelSekiTheyssier.pdf|Full version]] ] | ||
* **2021** | * **2021** | ||
- | * **[[%%publiRoot%%/2021/2021-PchelinaSchabanelSekiTheyssier.pdf|Oritatami systems assemble shapes no less | ||
- | complex than tile assembly model (aTAM)]]** \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Guillaume Theyssier. Submitted, 2021. \\ Supplementary material: [[https://hub.darcs.net/turedo2oritatami/turedo2oritatami|Turedo2oritatami compiler]] | ||
* **[[%%publiRoot%%/2021/2021-LevySchabanel.pdf|ENSnano: a 3D modeling software for DNA nanostructures]]** \\ Nicolas Levy, Nicolas Schabanel. //In [[http://dna27.iopconfs.org/home|DNA27]]//, LIPIcs, vol. 205, pp.5:1-23, doi:10.4230/LIPIcs.DNA.27.5, 2021.\\ **:!: best student paper & best presentation award.** \\ :!: Download ENSnano at: [ [[https://www.ens-lyon.fr/ensnano|ENSnano website]] ] [ [[https://www.youtube.com/channel/UC-5XMNJouMPsB9pW5Q9UVcA|Youtube channel]] ] | * **[[%%publiRoot%%/2021/2021-LevySchabanel.pdf|ENSnano: a 3D modeling software for DNA nanostructures]]** \\ Nicolas Levy, Nicolas Schabanel. //In [[http://dna27.iopconfs.org/home|DNA27]]//, LIPIcs, vol. 205, pp.5:1-23, doi:10.4230/LIPIcs.DNA.27.5, 2021.\\ **:!: best student paper & best presentation award.** \\ :!: Download ENSnano at: [ [[https://www.ens-lyon.fr/ensnano|ENSnano website]] ] [ [[https://www.youtube.com/channel/UC-5XMNJouMPsB9pW5Q9UVcA|Youtube channel]] ] | ||
* **2020** | * **2020** | ||
- | * **[[%%publiRoot%%/2020/2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://hal.archives-ouvertes.fr/hal-02410874/document|Full version]] ] \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Yuki Ubukata. In //[[http://latin2020.ime.usp.br/|LATIN]]//, Sao Paulo, 2020. [[https://hal.archives-ouvertes.fr/hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://apps.apple.com/us/app/caos-simulator/id1488203962|CAOS simulator]] implementing our simulation [ [[https://hub.darcs.net/nikaoOoOoO/CAOSSimulator|source code]] ]// | + | * **[[%%publiRoot%%/2020/2020-LATIN-PchelinaSchabanelSekiUbukata.pdf|Simple Intrinsic Simulation of Cellular Automata in Oritatami Molecular Folding Model]]** [ [[https://hal.archives-ouvertes.fr/hal-02410874/document|Full version]] ] \\ Daria Pchelina, Nicolas Schabanel, Shinnosuke Seki, Yuki Ubukata. In //[[http://latin2020.ime.usp.br/|LATIN]]//, LNCS 12118:425-436, Sao Paulo, 2020. doi:10.1007/978-3-030-61792-9_34 [[https://hal.archives-ouvertes.fr/hal-02410874v1|hal-02410874]]\\ //:!: Download the iOS app [[https://apps.apple.com/us/app/caos-simulator/id1488203962|CAOS simulator]] implementing our simulation [ [[https://hub.darcs.net/nikaoOoOoO/CAOSSimulator|source code]] ]// |
* **2019** | * **2019** | ||
* **[[https://www.mdpi.com/1422-0067/20/9/2259|Oritatami: A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://www.mdpi.com/journal/ijms|IJMS (Int. J. of Molecular Sciences)]], Special Issue Nucleic Acid Nanotechnology, 2019, 20(9), 2259.\\ [[https://doi.org/10.3390/ijms20092259]] | * **[[https://www.mdpi.com/1422-0067/20/9/2259|Oritatami: A Computational Model for Molecular Co-Transcriptional Folding ]]** [ [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki.pdf|PDF]] & [[%%publiRoot%%/2019/2019-IJMS-GearyMeunierSchabanelSeki-s1.pdf|supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[https://www.mdpi.com/journal/ijms|IJMS (Int. J. of Molecular Sciences)]], Special Issue Nucleic Acid Nanotechnology, 2019, 20(9), 2259.\\ [[https://doi.org/10.3390/ijms20092259]] | ||
* **2018** | * **2018** | ||
- | * **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** {{anchor:oritatamituring2018:}} [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], LIPIcs.ISAAC.2018.23:1-23:13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://arxiv.org/abs/1508.00510|Arxiv]] ] | + | * **[[%%publiRoot%%/2018/2018-ISAAC-OritatamiTuring-GearyMeunierSchabanelSeki.pdf|Proving the Turing Universality of Oritatami Co-Transcriptional Folding]]** [ [[http://www.irif.fr/~nschaban/oritatami/|Supplementary materials]] ]\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. [[http://isaac2018.ie.nthu.edu.tw/|ISAAC 2018]], LIPIcs.ISAAC.2018.23:1-23:13, Jiaoxi, Yilan County, Taiwan, Dec. 2018. [ [[https://arxiv.org/abs/1508.00510|Arxiv]] ] |
* **[[%%publiRoot%%/2018/2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://dna24sdnu.com/|DNA24]], LNCS 11145:19-36, Jinan, China, Oct. 2018.\\ Invited talk at [[https://ucnc2018.lacl.fr/self-assembly/|UCNC2018 Self-assembly, geometry and computation workshop]], Fontainebleau, June 2018. \\ //:!: Download the iOS app [[https://itunes.apple.com/us/app/id1335581323|Scary Pacman]] implementing our algorithms [ [[https://hub.darcs.net/nikaoOoOoO/OritatamiScaling|source code]] ]// | * **[[%%publiRoot%%/2018/2018-DNA24-OritatamiShapes-DemaineHendricksOlsenPatitzRogersSchabanelSekiThomas.pdf|Know When to Fold ’Em: Self-Assembly of Shapes by Folding in Oritatami]]**\\ Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, and Hadley Thomas. [[http://dna24sdnu.com/|DNA24]], LNCS 11145:19-36, Jinan, China, Oct. 2018.\\ Invited talk at [[https://ucnc2018.lacl.fr/self-assembly/|UCNC2018 Self-assembly, geometry and computation workshop]], Fontainebleau, June 2018. \\ //:!: Download the iOS app [[https://itunes.apple.com/us/app/id1335581323|Scary Pacman]] implementing our algorithms [ [[https://hub.darcs.net/nikaoOoOoO/OritatamiScaling|source code]] ]// | ||
* **2017** | * **2017** | ||
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* **2015** | * **2015** | ||
- | * **[[%%publiRoot%%/2015/2015-DNA21-GearyMeunierSchabanelSeki.pdf|Efficient universal computation by molecular co-transcriptional folding (Short announcement)]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //[[http://dna21.wyss.harvard.edu/|DNA21]]//, 1 page, 2015. [[#oritatamituring2018|Full version published at ISAAC 2018]] | + | * **[[%%publiRoot%%/2015/2015-DNA21-GearyMeunierSchabanelSeki.pdf|Efficient universal computation by molecular co-transcriptional folding (Short announcement)]]**\\ Cody Geary, Pierre-Étienne Meunier, Nicolas Schabanel, Shinnosuke Seki. //[[http://dna21.wyss.harvard.edu/|DNA21]]//, 1 page, 2015. |
- | * **2014** | + | |
* **[[%%publiRoot%%/2014/2014-ICALP-EisenstatMathieuSchabanel.pdf|Facility Location in Evolving Metrics]]**\\ with David Eisenstat and Claire Mathieu. //ICALP,// pages 459-470, 2014. | * **[[%%publiRoot%%/2014/2014-ICALP-EisenstatMathieuSchabanel.pdf|Facility Location in Evolving Metrics]]**\\ with David Eisenstat and Claire Mathieu. //ICALP,// pages 459-470, 2014. | ||