Author

Laurent Modolo

scRNASeq

R packages to install

install.packages('tidyverse')
install.packages('patchwork')
install.packages('Seurat')
install.packages('sctransform')
if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}
remotes::install_github("satijalab/seurat-data", quiet = TRUE)
setRepositories(ind = 1:3, addURLs = c(satijalab = 'https://satijalab.r-universe.dev', bnprks = 'https://bnprks.r-universe.dev/'))
install.packages(c("BPCells", "presto", "glmGamPoi"))
if(!requireNamespace("BiocManager", quietly = TRUE)) {
 install.packages("BiocManager") 
}
BiocManager::install("tradeSeq")
BiocManager::install("clusterExperiment")
install.packages('reticulate')